Bioinformatics

• GlycoCT—a unifying sequence format for carbohydrates

  S Herget, R Ranzinger, K Maass & C Lieth
  Original research paper: Carbohydrate Research 343
  doi:10.1016/j.carres.2008.03.011

  Abstract

• Molecular motions of human HIV-1 gp120 envelope glycoproteins

  Shu-Qun Liu, Shi-Xi Liu & Yun-Xin Fu
  Original research paper: Journal of Molecular Modeling 14
  doi:10.1007/s00894-008-0327-7

  Abstract

• Prediction of N-linked glycan branching patterns using artificial neural networks

  R Senger & M Karim
  Original research paper: Mathematical Biosciences 211
  doi:10.1016/j.mbs.2007.10.005

  Abstract

• Glycoconjugate Data Bank:Structures an annotated glycan structure database and N-glycan primary structure verification service

  T. Nakahara et al.
  Original research paper: Nucleic Acids Research 36
  doi:10.1093/nar/gkm833

  Abstract

• Glycan topology determines human adaptation of avian H5N1 virus hemagglutinin

  Aarthi Chandrasekaran et al.
  Original research paper: Nature Biotechnology 26 107-113 (2008)
  doi:10.1038/nbt1375

  Abstract

• Frontiers in glycomics: Bioinformatics and biomarkers in disease An NIH White Paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11–13, 2006)

  Nicolle H. Packer et al.
  Original research paper: PROTEOMICS 8
  doi:10.1002/pmic.200700917

  Abstract

• In silico modulation of apoptotic Bcl-2 proteins by mistletoe lectin-1: Functional consequences of protein modifications

  Tasneem A. Khwaja et al.
  Original research paper: Journal of Cellular Biochemistry 103
  doi:10.1002/jcb.21412

  Abstract

• From the Cover: Quantitative biochemical rationale for differences in transmissibility of 1918 pandemic influenza A viruses

  A. Srinivasan et al.
  Original research paper: Proceedings of the National Academy of Sciences 105
  doi:10.1073/pnas.0711963105

  Abstract

• GlycoWorkbench: A Tool for the Computer-Assisted Annotation of Mass Spectra of Glycans

  Alessio Ceroni et al.
  Original research paper: Journal of Proteome Research 7
  doi:10.1021/pr7008252

  Abstract

• CancerLectinDB: a database of lectins relevant to cancer

  Deepa Damodaran et al.
  Original research paper: Glycoconjugate Journal 25
  doi:10.1007/s10719-007-9085-5

  Abstract

• HPLC-based analysis of serum N-glycans on a 96-well plate platform with dedicated database software

  L Royle et al.
  Original research paper: Analytical Biochemistry 376
  doi:10.1016/j.ab.2007.12.012

  Abstract

• PRRDB: A comprehensive database of Pattern-Recognition Receptors and their ligands

  Sneh Lata & Gajendra Raghava
  Original research paper: BMC Genomics 9
  doi:10.1186/1471-2164-9-180

  Abstract

• Structural glycobiology: A game of snakes and ladders

  M. L Demarco & R. J Woods
  Original research paper: Glycobiology 18
  doi:10.1093/glycob/cwn026

  Abstract

• An Introduction to Bioinformatics for Glycomics Research

  Kiyoko F. Aoki-kinoshita & Fran Lewitter
  Original research paper: PLoS Computational Biology 4
  doi:10.1371/journal.pcbi.1000075

  Abstract

• Dynamics of sialyl Lewisa in aqueous solution and prediction of the structure of the sialyl Lewisa–SelectinE complex

  K Veluraja & A Seethalakshmi
  Original research paper: Journal of Theoretical Biology 252
  doi:10.1016/j.jtbi.2007.12.024

  Abstract

• Adhesive Dynamics Simulation of Neutrophil Arrest with Stochastic Activation

  E. F. Krasik, K. E. Caputo & D. A. Hammer
  Original research paper: Biophysical Journal 95
  doi:10.1529/biophysj.107.119677

  Abstract