| The Consortium Quarterly Newsletter |
Vol. 6 No. 4, June 2008
- Vol. 6 No. 3, March 2008
- Vol. 6 No. 1 & 2, December 2007
- Vol. 5 No. 4, July 2007
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- Vol. 5 No. 2, December 2006
- Vol. 5 No. 1, September 2006
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- Vol. 4 No. 2, December 2005
- Vol. 4 No. 1, September 2005
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- Vol. 3 No. 4, June 2005
- Vol. 3 No. 3, March 2005
- Vol. 3 No. 2, December 2004
- Vol. 3 No. 1, September 2004
- Vol. 2 No. 4, June 2004
- Vol. 2 No. 3, March 2004
- Vol. 2 No. 2, December 2003
- Vol. 2 No. 1, September 2003
- Vol. 1 No. 3, March 2003
- Vol. 1 No. 2, December 2002
- Vol. 1 No. 1, September 2002
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| Research Articles (see posting policy below) |
In Press
- Subramanyam S, Smith DF, Clemens JC, A Webb M, Sardesai N, Williams CE. Functional characterization of HFR-1, a high mannose N-glycan-specific wheat lectin induced by Hessian fly larvae. Plant Physiol. 2008 May 14 [Epub ahead of print]
- Stowell SR, Arthur CM, Slanina KA, Horton JR, Smith DF, Cummings RD. Dimeric galectin-8 induces phosphatidylserine exposure in leukocytes through polylactosamine recognition by the carboxyl terminal domain. J Biol Chem. 2008 May 2 [Epub ahead of print]
- Fouquaert E, Peumans WJ, Smith DF, Proost P, Savvides SN, Damme EJ. The 'old' euonymus europeaus agglutinin represents a novel family of ubiquitous plant proteins. Plant Physiol.2008 May 1 [Epub ahead of print]
- Stevens J, Blixt O, Chen L-M, Donis R, Paulson JC, Wilson IA. Recent avian H5N1 viruses exhibit increased propensity for acquiring human receptor specificity. J Mol Biol. 2008 11 April
- Walker JA, Smith KG. Dependence of surface monoclonal antibody binding on dynamic changes in FcgammaRIIb expression. Immunology. 2008 Jul;124(3):412-8
- Wei CJ, Xu L, Kong WP, Shi W, Canis K, Stevens J, Yang ZY, Dell A, Haslam SM, Wilson IA, Nabel GJ. Comparative Efficacy of Neutralizing Antibodies Elicited by Recombinant Hemagglutinin Proteins from Avian H5N1 Influenza Virus. J Virol. 2008 Jul;82(13):6200-8
- Astronomo RD, Lee HK, Scanlan CN, Pantophlet R, Huang CY, Wilson IA, Blixt O, Dwek RA, Wong CH, Burton DR. A glycoconjugate antigen, based on the recognition motif of a broadly-neutralising HIV antibody, 2G12, is immunogenic but elicits antibodies unable to bind to the 'self' glycans of gp120. J Virol. 2008 Jul;82(13):6359-68.
- Luallen RJ, Lin J, Fu H, Cai KK, Agrawal C, Mboudjeka I, Lee FH, Montefiori D, Smith DF, Doms RW, Geng Y. An engineered Saccharomyces cerevisiae strain binds the broadly neutralizing HIV-1 antibody 2G12 and elicits mannose-specific, gp120 binding antibodies. J Virol. 2008 Jul;82(13):6447-57.
- Krarup A, Mitchell DA, Sim RB. Recognition of acetylated oligosaccharides by human L-ficolin. Immunol Lett. 2008 Jun 30;118(2):152-6.
- Nairn AV, York WS, Harris K, Hall EM, Pierce JM, Moremen KW. Regulation of Glycan Structures in Animal Tissues: TRANSCRIPT PROFILING OF GLYCAN-RELATED GENES. J Biol Chem. 2008 Jun 20;283(25):17298-313.
- Kawar ZS, Johnson TK, Natunen S, Lowe JB, Cummings RD. PSGL-1 from the murine leukocytic cell line WEHI-3 is enriched for core 2-based O-glycans with sialyl Lewis x antigen. Glycobiology. 2008 Jun;18(6):441-6.
- Marcos NT, Magalh‹es A, Ferreira B, Oliveira MJ, Carvalho AS, Mendes N, Gilmartin T, Head SR, Figueiredo C, David L, Santos-Silva F, Reis CA. Helicobacter pylori induces beta3GnT5 in human gastric cell lines, modulating expression of the SabA ligand sialyl-Lewis x. J Clin Invest. 2008 Jun;118(6):2325-36
- Wells CA, Salvage-Jones JA, Li X, Hitchens K, Butcher S, Murray RZ, Beckhouse AG, Lo YL, Manzanero S, Cobbold C, Schroder K, Ma B, Orr S, Stewart L, Lebus D, Sobieszczuk P, Hume DA, Stow J, Blanchard H, Ashman RB. The Macrophage-Inducible C-Type Lectin, Mincle, Is an Essential Component of the Innate Immune Response to Candida albicans. J Immunol. 2008 Jun 1;180(11):7404-13.
- Chen ST, Lin YL, Huang MT, Wu MF, Cheng SC, Lei HY, Lee CK, Chiou TW, Wong CH, Hsieh SL. CLEC5A is critical for dengue-virus-induced lethal disease. Nature. 2008 May 29;453(7195):672-6.
- Blixt O, Han S, Liao L, Zeng Y, Hoffmann J, Futakawa S, Paulson JC. Sialoside analogue arrays for rapid identification of high affinity siglec ligands. J Am Chem Soc. 2008 May 28;130(21):6680-1.
- Belser JA, Blixt O, Chen L-M, Pappas C, Maines TR, Hoeven NV, Donis R, Busch J, McBride R, Paulson JC, Katz JM, Tumpey TM. Contemporary North American influenza H7 viruses possess human receptor specificity: Implications for virus transmissibility. Proc. Natl. Acad. Sci. USA. 2008 May 27;105(21):7558-63.
- Lehmann F, Kelm S, Dietz F, von Itzstein M, Tiralongo J. The evolution of galactose a2,3-sialyltransferase: Ciona intestinalis ST3GAL I/II and Takifugu rubripes ST3GAL II sialylate Galb1,3GalNAc structures on glycoproteins but not glycolipids. Glycoconj J. 2008 May;25(4):323-34.
- Walti MA, Walser PJ, Thore S, Grunler A, Bednar M, Kunzler M, Aebi M. Structural Basis for Chitotetraose Coordination by CGL3, a Novel Galectin-Related Protein from Coprinopsis cinerea. J Mol Biol. 2008 May 23;379(1):146-59
- Glenn KA, Nelson RF, Wen HM, Mallinger AJ, Paulson HL. Diversity in tissue expression, substrate binding and SCF complex formation for a lectin family of ubiquitin ligases. J Biol Chem. 2008 May 9;283(19):12717-29.
- Zupancic ML, Frieman M, Smith D, Alvarez RA, Cummings RD, Cormack BP. Glycan microarray analysis of Candida glabrata adhesin ligand specificity. Mol Microbiol. 2008 May;68(3):547-59.
- Koharudin LM, Viscomi AR, Jee JG, Ottonello S, Gronenborn AM. The evolutionarily conserved family of cyanovirin-N homologs: structures and carbohydrate specificity. Structure. 2008 Apr;16(4):570-84.
- Stowell SR, Arthur CM, Mehta P, Slanina KA, Blixt O, Leffler H, Smith DF, Cummings RD. Galectins-1, -2 and -3 exhibit differential recognition of sialylated glycans and blood group antigens. J Biol Chem. 2008 Apr 11;283(15):10109-23.
- Neu U, Woellner K, Gauglitz G, Stehle T. Structural basis of GM1 ganglioside recognition by simian virus 40. Proc Natl Acad Sci U S A. 2008 Apr 1;105(13):5219-24
- Zajonc DM, Savage PB, Bendelac A, Wilson IA, Teyton L. Crystal structures of mouse CD1d-iGb3 complex and its cognate Valpha14 T cell receptor suggest a model for dual recognition of foreign and self glycolipids. J Mol Biol. 2008 Apr 4;377(4):1104-16.
- Tabata S, Kuroki K, Wang J, Kajikawa M, Shiratori I, Kohda D, Arase H, Maenaka K. Biophysical characterization of O-glycosylated CD99 recognition by paired Ig-like type 2 receptors (PILR). J Biol Chem. 2008 Apr 4;283(14):8893-901.
- Lameignere E, Malinovska L, Slavikova M, Duchaud E, Mitchell EP, Varrot A, Sedo O, Imberty A, Wimmerova M. Structural basis for mannose recognition by alectin from opportunistic bacteria Burkholderia cenocepacia. Biochem J. 2008 Apr 15;411(2):307-18.
- Chessa D, Dorsey CW, Winter MG, Baumler AJ. Binding specificity of Salmonella plasmid-encoded fimbriae assessed by glycomics. J Biol Chem. 2008 Mar 28;283(13):8118-24.
- Norling LV, Sampaio AL, Cooper D, Perretti M. Inhibitory control of endothelial galectin-1 on in vitro and in vivo lymphocyte trafficking. FASEB J. 2008 Mar;22(3):682-90.
- Hashimoto K, Aoki-Kinoshita KF, Ueda N, Kanehisa M, Mamitsuka H. A new efficient probabilistic model for mining labeled ordered trees applied to glycobiology. ACM Transactions on Knowledge Discovery from Data (TKDD) Article 6, 2008 Mar 2(1): 1-30.
- Srinivasan A, Viswanathan K, Raman R, Chandrasekaran A, Raguram S, Tumpey TM, Sasisekharan V, Sasisekharan R. Quantitative biochemical rationale for differences in transmissibility of 1918 pandemic influenza A viruses. Proc Natl Acad Sci U S A. 2008 Feb 26;105(8):2800-5.
- Chaturvedi R, Heimburg J, Yan J, Koury S, Sajjad M, Abdel-Nabi HH, Rittenhouse-Olson K. Tumor immunolocalization using 124I-iodine labeled JAA-F11 antibody to Thomsen-Friedenreich alpha-linked antigen. Appl Radiat Isot. 2008 Mar;66(3):278-87.
- Gaskill PJ, Zandonatti M, Gilmartin T, Head SR, Fox HS. Macrophage Derived SIV Exhibits Enhanced Infectivity by Comparison with T Cell Derived Virus. J Virol. 2008 Feb;82(3):1615-21.
- Wearne KA, Winter HC, Goldstein IJ. Temporal changes in the carbohydrates expressed on BG01 human embryonic stem cells during differentiation as embryoid bodies. Glycoconj J. 2008 Feb;25(2):121-36.
- Groux-Degroote S, Krzewinski-Recchi MA, Cazet A, Vincent A, Lehoux S, Lafitte JJ, Van Seuningen I, Delannoy P. IL-6 and IL-8 increase the expression of glycosyltransferases and sulfotransferases involved in the biosynthesis of sialylated and/or sulfated Lewisx epitopes in the human bronchial mucosa. Biochem J. 2008 Feb 15;410(1):213-23.
- Hashimoto K, Yoshizawa AC, Okuda S, Kuma K, Goto S, Kanehisa M. The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes. J Lipid Res. 2008 Jan;49(1):183-91.
- Chandrasekaran A, Srinivasan A, Raman R, Viswanathan K, Raguram S, Tumpey TM, Sasisekharan V, Sasisekharan R. Glycan topology determines human adaptation of avian H5N1 virus hemagglutinin. Nat Biotechnol. 2008 Jan;26(1):107-13.
- Karamanska R, Clarke J, Blixt O, Macrae JI, Zhang JQ, Crocker PR, Laurent N, Wright A, Flitsch SL, Russell DA, Field RA. Surface plasmon resonance imaging for real-time, label-free analysis of protein interactions with carbohydrate microarrays. Glycoconj J. 2008 Jan;25(1):69-74.
- Blixt O, Hoffmann J, Svenson S, Norberg T. Pathogen specific carbohydrate antigen microarrays: a chip for detection of Salmonella O-antigen specific antibodies. Glycoconj J. 2008 Jan;25(1):27-36.
- Shilova NV, Galanina OE, Rubina AY, Butvilovskaya VI, Huflejt ME, Chambers J, Roucoux A, Bovin NV. 2-Aminopyridine-a label for bridging of oligosaccharides HPLC profiling and glycoarray printing. Glycoconj J. 2008 Jan;25(1):11-4.
- Song X, Xia B, Lasanajak Y, Smith DF, Cummings RD. Quantifiable fluorescent glycan microarrays. Glycoconj J. 2008 Jan;25(1):15-25.
- Blixt O, Allin K, Bohorov O, Liu X, Andersson-Sand H, Hoffmann J, Razi N. Glycan microarrays for screening sialyltransferase specificities. Glycoconj J. 2008 Jan;25(1):59-68.
- Powlesland AS, Fisch T, Taylor ME, Smith DF, Tissot B, Dell A, Pšhlmann S, Drickamer K. A novel mechanism for LSECtin binding to Ebola virus surface glycoprotein through truncated glycans. J Biol Chem. 2008 Jan 4;283(1):593-602.
2007 (in alphabetical order by first author)
- Agusti R, Giorgi ME, de Lederkremer RM. The trans-sialidase from Trypanosoma cruzi efficiently transfers alpha-(2-->3)-linked N-glycolylneuraminic acid to terminal beta-galactosyl units. Carbohydr Res. 2007 Nov 26;342(16):2465-9.
- Amonsen M, Smith DF, Cummings RD, Air GM. Human Parainfluenza Viruses hPIV1 and hPIV3 Bind Oligosaccharides with {alpha}2-3-Linked Sialic Acids That Are Distinct from Those Bound by H5 Avian Influenza Virus Hemagglutinin. J Virol. 2007 Aug;81(15):8341-5.
- Baker HM, Basu I, Chung MC, Caradoc-Davies T, Fraser JD, Baker EN. Crystal structures of the staphylococcal toxin SSL5 in complex with sialyl Lewis X reveal a conserved binding site that shares common features with viral and bacterial sialic acid binding proteins. J Mol Biol. 2007 Dec 14;374(5):1298-308.
- Baptiste TA, James A, Saria M, Ochieng J. Mechano-transduction mediated secretion and uptake of galectin-3 in breast carcinoma cells: Implications in the extracellular functions of the lectin. Exp Cell Res. 2007 Feb 15;313(4):652-64.
- Bax M, Garcia-Vallejo JJ, Jang-Lee J, North SJ, Gilmartin TJ, Hernandez G, Crocker PR, Leffler H, Head SR, Haslam SM, Dell A, van Kooyk Y. Dendritic cell maturation results in pronounced changes in glycan expression affecting recognition by siglecs and galectins. J Immunol. 2007 Dec 15;179(12):8216-24.
- Boraston AB, Ficko-Blean E, Healey M. Carbohydrate Recognition by a Large Sialidase Toxin from Clostridium perfringens. Biochemistry. 2007 Oct 9;46(40):11352-60
- Carlsson S, Oberg CT, Carlsson MC, Sundin A, Nilsson UJ, Smith D, Cummings RD, Almkvist J, Karlsson A, Leffler H. Affinity of galectin-8 and its carbohydrate recognition domains for ligands in solution and at the cell surface. Glycobiology. 2007 Jun;17(6):663-76.
- Chung MC, Wines BD, Baker H, Langley RJ, Baker EN, Fraser JD. The crystal structure of staphylococcal superantigen-like protein 11 in complex with sialyl Lewis X reveals the mechanism for cell binding and immune inhibition. Mol Microbiol. 2007 Dec;66(6):1342-55.
- de Melo FH, Butera D, Medeiros RS, Andrade LN, Nonogaki S, Soares FA, Alvarez RA, Moura da Silva AM, Chammas R. Biological Applications of a Chimeric Probe for the Assessment of Galectin-3 Ligands. J Histochem Cytochem. 2007 Oct;55(10):1015-26
- Desplats PA, Denny CA, Kass KE, Gilmartin T, Head SR, Sutcliffe JG, Seyfried TN, Thomas EA. Glycolipid and ganglioside metabolism imbalances in Huntington's disease. Neurobiol Dis. 2007 Sep;27(3):265-77.
- Dickerson TJ, McKenzie KM, Hoyt AS, Wood MR, Janda KD, Brenner SB, Lerner RA. Phage escape libraries for checkmate analysis. Proc Natl Acad Sci U S A. 2007 Jul 31;104(31):12703-12708.
- Eichler W. Characteristics of two CD75-related cell-surface expressed antigens of human lymphocytes. Mol Immunol. 2007 Mar;44(8):2047-55.
- Feinberg H, Taylor ME, Weis WI. Scavenger receptor C-type lectin binds to the leukocyte cell surface glycan Lewis x by a novel mechanism. J Biol Chem.2007 Jun 8;282(23):17250-8.
- Fort J, de la Ballina LR, Burghardt HE, Ferrer-Costa C, Turnay J, Ferrer-Orta C, Uson I, Zorzano A, Fernandez-Recio J, Orozco M, Lizarbe MA, Fita I, Palacin M. The structure of human 4F2hc ectodomain provides a model for homodimerization and electrostatic interaction with plasma membrane. J Biol Chem. 2007 Oct 26;282(43):31444-52.
- Glaser L, Conenello G, Paulson J, Palese P. Effective replication of human influenza viruses in mice lacking a major alpha2,6 sialyltransferase. Virus Res. 2007 Jun;126(1-2):9-18.
- Goldberg D, Bern M, Parry S, Sutton-Smith M, Panico M, Morris HR, Dell A. Automated N-Glycopeptide Identification Using a Combination of Single- and Tandem-MS. J Proteome Res. 2007 Oct 5;6(10):3995-4005.
- Han S, Collins BE, and Paulson J.C. Synthesis of 9-Substituted Sialic Acids As Probes for CD22-Ligand Interactions on B cells. Frontiers in Modern Carbohydrate Chemistry. ACS Symposium Series. 2007;960:2-14.
- Kaltgrad E, Sen Gupta S, Punna S, Huang CY, Chang A, Wong CH, Finn MG, Blixt O. Anti-Carbohydrate Antibodies Elicited by Polyvalent Display on a Viral Scaffold. Chembiochem. 2007 Aug 6;8(12):1455-1462
- Kobayashi M, Lee H, Schaffer L, Gilmartin TJ, Head SR, Takaishi S, Wang TC, Nakayama J, Fukuda M. A Distinctive Set of Genes Is Up-regulated During the Inflammation-carcinoma Sequence in Mouse Stomach Infected by Helicobacter felis. J Histochem Cytochem. 2007 Mar;55(3):263-74.
- Kovalenko EI, Abakushina E, Telford W, Kapoor V, Korchagina E, Khaidukov S, Molotkovskaya I, Sapozhnikov A, Vlaskin P, Bovin N. Clustered carbohydrates as a target for natural killer cells: a model system. Histochem Cell Biol. 2007 Mar;127(3):313-26.
- Kumari K, Gulati S, Smith DF, Gulati U, Cummings RD, Air GM. Receptor binding specificity of recent human H3N2 influenza viruses. Virol J. 2007 May 9;4:42
- Leonidas DD, Swamy BM, Hatzopoulos GN, Gonchigar SJ, Chachadi VB, Inamdar SR, Zographos SE, Oikonomakos NG. Structural Basis for the Carbohydrate Recognition of the Sclerotium rolfsii Lectin. J Mol Biol. 2007 May 11;368(4):1145-61.
- Marotte K, Sabin C, Preville C, Moume-Pymbock M, Wimmerova M, Mitchell EP, Imberty A, Roy R. X-ray Structures and Thermodynamics of the Interaction of PA-IIL from Pseudomonas aeruginosa with Disaccharide Derivatives. Chem Med Chem. 2007 Jul 10;2(9):1328-1338.
- Mitoma J, Bao X, Petryanik B, Schaerli P, Gauguet JM, Yu SY, Kawashima H, Saito H, Ohtsubo K, Marth JD, Khoo KH, von Andrian UH, Lowe JB, Fukuda M. Critical functions of N-glycans in L-selectin-mediated lymphocyte homing and recruitment. Nat Immunol. 2007 Apr;8(4):409-18.
- Northen TR, Yanes O, Northen MT, Marrinucci D, Uritboonthai W, Apon J, Golledge SL, Nordstršm A, Siuzdak G. Clathrate nanostructures for mass spectrometry. Nature. 2007 Oct 25;449(7165):1033-6.
- Obukhova P, Rieben R, Bovin N. Normal human serum contains high levels of anti-Galalpha1-4GlcNAc antibodies. Xenotransplantation. 2007 Nov;14(6):627-35.
- Parry S, Ledger V, Tissot B, Haslam SM, Scott J, Morris HR, Dell A Integrated mass spectrometric strategy for characterising the glycans from glycosphingolipids and glycoproteins : direct identification of sialyl Lex in mouse. Glycobiology.2007 Jun;17(6):646-54.
- Peumans WJ, Fouquaert E, Jauneau A, Rouge P, Lannoo N, Hamada H, Alvarez R, Devreese B, Van Damme EJ. The liverwort Marchantia polymorphia expresses orthologs of the fungal agaricus bisporus agglutinin family. Plant Physiol.2007 Jun;144(2):637-47.
- Pilobello KT, Slawek DE, Mahal LK. A ratiometric lectin microarray approach to analysis of the dynamic mammalian glycome. Proc Natl Acad Sci U S A. 2007 Jul 10;104(28):11534-9.
- Rademacher C, Shoemaker GK, Kim HS, Zheng RB, Taha H, Liu C, Nacario RC, Schriemer DC, Klassen JS, Peters T, Lowary TL. Ligand Specificity of CS-35, a Monoclonal Antibody That Recognizes Mycobacterial Lipoarabinomannan: A Model System for Oligofuranoside-Protein Recognition. J Am Chem Soc. 2007 Aug 29;129(34):10489-10502.
- Rittenhouse-Olson K. Jaa-f11: extending the life of mice with breast cancer. Expert Opin Biol Ther. 2007 Jul;7(7):923-8.
- Shi S, Ge C, Luo Y, Hou X, Haltiwanger RS, Stanley P. The threonine that carries fucose, but not fucose, is required for Cripto to facilitate Nodal signaling. J Biol Chem. 2007 Jul 13;282(28):20133-41.
- Suga A, Yamanishi Y, Hashimoto K, Goto S, Kanehisa M. An improved scoring scheme for predicting glycan structures from gene expressison data. Genome Informatics. 2007 18:237-246.
- Tateno H, Li H, Schur MJ, Bovin N, Crocker PR, Wakarchuk WW, Paulson JC. Distinct endocytic mechanisms of CD22 (Siglec-2) and Siglec-F reflect roles in cell-signaling and innate immunity. Mol Cell Biol. 2007 Aug;27(16):5699-710.
- Teuton JR, Brandt CR. Sialic acid on herpes simplex virus type-1S envelope glycoproteins is required for effeicient infection of Cells. J. Virol. 2007 Apr;81(8):3731-9.
- Tribulatti MV, Mucci J, Cattaneo V, AgŸero F, Gilmartin T, Head SR, Campetella O. Galectin-8 Induces Apoptosis in the CD4highCD8high Thymocyte Subpopulation. Glycobiology. 2007 Dec;17(12):1404-12.
- Van Damme EJ, Culerrier R, Barre A, Alvarez R, Rouge P, Peumans WJ. A Novel Family of Lectins Evolutionarily Related to Class V Chitinases. An Example of Neofunctionalization in Legumes. Plant Physiol. 2007 Jun;144(2):662-72.
- Van Damme EJ, Nakamura-Tsuruta S, Smith DF, Ongenaert M, Winter HC, Rouge P, Goldstein IJ, Mo H, Kominami J, Culerrier R, Barre A, Hirabayashi J, Peumans WJ. Phylogenetic and specificity studies of two-domain GNA-related lectins: generation of multispecificity through domain duplication and divergent evolution. Biochem J. 2007 May 15;404(1):51-61.
- Veerman KM, Williams MJ, Uchimura K, Singer MS, Merzaban JS, Naus S, Carlow DA, Owen P, Rivera-Nieves J, Rosen SD, Ziltener HJ. Interaction of the selectin ligand PSGL-1 with chemokines CCL21 and CCL19 facilitates efficient homing of T cells to secondary lymphoid organs. Nat Immunol. 2007 May;8(5):532-9
- Wilker PR, Sedy JR, Grigura V, Murphy TL, Murphy KM. Evidence for carbohydrate recognition and homotypic and heterotypic binding by the TIM family. Int Immunol. 2007 Jun;19(6):763-73.
- Yang ZY, Wei CJ, Kong WP, Wu L, Xu L, Smith DF, Nabel GJ. Immunization by avian h5 influenza hemagglutinin mutants with altered receptor binding specificity. Science. 2007 Aug 10;317(5839):825-8
2006
- Attrill H, Imamura A, Sharma RS, Kiso M, Crocker PR, van Aalten DM. Siglec-7 undergoes a major conformational change when complexed with the a2,8-disialylganglioside GT1b. J Biol Chem. 2006;281:32774-32783.
- Avril T, North SJ, Haslam SM, Willison HJ, Crocker PR. Probing the cis interactions of the inhibitory receptor Siglec-7 with a2,8-disialylated ligands on natural killer cells and other leukocytes using glycan-specific antibodies and by analysis of a2,8-sialyltransferase gene expression. J Leukoc Biol. 2006;80:787-796.
- Bohorov O, Andersson-Sand H, Hoffmann J, Blixt O. Arraying glycomics: a novel bi-functional spacer for one-step micro-scale derivatization of free reducing glycans. Glycobiology. 2006;16(12):21C-27C.
- Cheng TY, Relloso M, Van Rhijn I, Young DC, Besra GS, Briken V, Zajonc DM, Wilson IA, Porcelli S, Moody DB. Role of lipid trimming and CD1 groove size in cellular antigen presentation. EMBO J. 2006;25:2989-2999.
- Chiu MG, Johnson TM, Woolf AS, Dahm-Vicker EM, Long DA, Guay-Woodford L, Hillman KA, Bawumia S, Venner K, Hughes RC, Poirier F, Winyard PJ. Galectin-3 associates with the primary cilium and modulates cyst growth in congenital polycystic kidney disease. Am J Pathol. 2006;169:1925-38.
- Collins BE, Blixt O, Han S, Duong B, Li H, Nathan JK, Bovin N, Paulson JC. High-affinity ligand probes of CD22 overcome the threshold set by cis ligands to allow for binding, endocytosis, and killing of B cells. J Immunol. 2006;177:2994-3003.
- Comelli EM, Head SR, Gilmartin T, Whisenant T, Haslam SM, North SJ, Wong NK, Kudo T, Narimatsu H, Esko JD, Drickamer K, Dell A, Paulson JC. A focused microarray approach to functional glycomics: transcriptional regulation of the glycome. Glycobiology. 2006;16:117-131.
- Comelli EM, Sutton-Smith M, Yan Q, Amado M, Panico M, Gilmartin T, Whisenant T, Lanigan CM, Head SR, Goldberg D, Morris HR, Dell A, Paulson JC. Activation of murine CD4+ and CD8+ T lymphocytes leads to dramatic remodeling of N-linked glycans. J Immunol. 2006;177:2431-2440.
- Coombs PJ, Taylor ME, Drickamer K. Two categories of mammalian galactose-binding receptors distinguished by glycan array profiling. Glycobiology. 2006;16:1C-7C.
- De Kerpel M, Van Molle I, Brys L, Wyns L, De Greve H, Bouckaert J. N-terminal truncation enables crystallization of the receptor-binding domain of the FedF bacterial adhesin. Acta Crystallographica Sect F Struct Biol Cryst Commun. 2006; 62:1278-82.
- Desplats PA, Kass KE, Gilmartin T, Stanwood GD, Woodward EL, Head SR, Sutcliffe JG, Thomas EA. Selective deficits in the expression of striatal-enriched mRNAs in Huntington’s disease. J Neurochem. 2006;96:743-757.
- Diskin S, Kumar J, Cao Z, Schumann JS, Gilmartin T, Head SR, Panjwani N. Detection of differentially expressed glycogenes in trabecular meshwork of eyes with primary open-angle glaucoma. Invest Ophthalmol Vis Sci. 2006;47:1491-1499.
- Gambaryan A, Tuzikov A, Pazynina G, Bovin N, Balish A, Klimov A. Evolution of the receptor binding phenotype of influenza A (H5) viruses. Virology. 2006;344:432-438. (Reprinted with permission from Elsevier. Visit Journal Homepage.)
- Ghosh S, Bandulet C, Nitschke L. Regulation of B cell development and B cell signaling by CD22 and its ligands a2,6-linked sialic acids. Int Immunol. 2006;18:603-611.
- Goldberg D, Bern M, Li B, Lebrilla CB. Automatic determination of O-glycan structure from fragmentation spectra. J Proteome Res. 2006;5:1429-1434.
- Grun CH, van Vliet SJ, Schiphorst WE, Bank CM, Meyer S, van Die I, van Kooyk Y. One-step biotinylation procedure for carbohydrates to study carbohydrate-protein interactions. Anal Biochem. 2006;354:54-63. (Reprinted with permission from Elsevier. Visit Journal Homepage.)
- Hoffhines AJ, Damoc E, Bridges KG, Leary JA, Moore KL. Detection and purification of tyrosine-sulfated proteins using a novel anti-sulfotyrosine monoclonal antibody. J Biol Chem. 2006;281:37877-87.
- Jang-Lee J, North SJ, Sutton-Smith M, Goldberg D, Panico M, Morris H, Haslam S, Dell A. Glycomic profiling of cells and tissues by mass spectrometry: fingerprinting and sequencing methodologies. Methods Enzymol. 2006;415:59-86.
- Kao C, Sandau MM, Daniels MA, Jameson SC. The sialyltransferase ST3Gal-I is not required for regulation of CD8-class I MHC binding during T cell development. J Immunol. 2006;176:7421-7430.
- Kim YM, Park KI, Choi KS, Alvarez RA, Cummings RD, Cho M. Lectin (MCL) from the manila clam Ruditapes philippinarum is induced upon infection with the protozoan parasite Perkinsus olseni. J Biol Chem. 2006;281:26854-26864.
- Kinjo Y, Tupin E, Wu D, Fujio M, Garcia-Navarro R, Benhnia MR, Zajonc DM, Ben-Menachem G, Ainge GD, Painter GF, Khurana A, Hoebe K, Behar SM, Beutler B, Wilson IA, Tsuji M, Sellati TJ, Wong C-H, Kronenberg M. Natural killer T cells recognize diacylglycerol antigens from pathogenic bacteria. Nat Immunol. 2006;7:978-986.
- Kuboyama T, Hirata K, Aoki-Kinoshita KF, Kashima H, Yasuda H. A gram distribution kernel applied to glycan classification and motif extraction. Genome Informatics. 2006;17:25-34.
- Lannoo N, Peumans WJ, Van Pamel E, Alvarez R, Xiong T-C, Hause G, Mazars C, Els JM, Van Damme EJM. Localization and in vitro binding studies suggest that the cytoplasmic/nuclear tobacco lectin can interact in situ with high-mannose and complex N-glycans. FEBS Lett. 2006;580:6329-6337.
- Long JM. Analysis of neural cell function in gene knockout mice: behavior. Methods Enzymol. 2006;417:66-79.
- Markova V, Smetana K Jr, Jenikova G, Lachova J, Krejcirikova V, Poplstein M, Fabry M, Brynda J, Alvarez RA, Cummings RD, Maly P. Role of the carbohydrate recognition domains of mouse galectin-4 in oligosaccharide binding and epitope recognition and expression of galectin-4 and galectin-6 in mouse cells and tissues. Int J Mol Med. 2006;18:65-76.
- McGreal EP, Rosas M, Brown GD, Zamze S, Wong SY, Gordon S, Martinez-Pomares L, Taylor PR. The carbohydrate recognition domain of Dectin-2 is a C-type lectin with specificity for high-mannose. Glycobiology. 2006;16:422-430.
- Monk DR, Sutton-Smith M, Dell A, Garden OA. Letter to the Glyco-Forum: Preparation of CD25+ and CD25-CD4+ T cells for glycomic analysis - a cautionary tale of serum glycoprotein sequestration Glycobiology. 2006;16:11G-15G.
- Nam HJ, Gurda-Whitaker B, Yee Gan W, Ilaria S, McKenna R, Mehta P, Alvarez RA, Agbandje-McKenna M. Identification of the sialic acid structures recognized by minute virus of mice and the role of binding affinity in virulence adaptation. J Biol Chem. 2006;281:25670-25677.
- Nasirikenari M, Segal BH, Ostberg JR, Urbasic A, Lau JT. Altered granulopoietic profile and exaggerated acute neutrophilic inflammation in mice with targeted deficiency in the sialyltransferase, ST6Gal-1. Blood. 2006;108:3397-3405.
- Nitschke L, Lajaunias F, Moll T, Ho L, Martinez-Soria E, Kikuchi S, Santiago-Raber ML, Dix C, Parkhouse RM, Izui S. Expression of aberrant forms of CD22 on B lymphocytes in Cd22a lupus-prone mice affects ligand binding. Int Immunology. 2006;18:59-68.
- Powlesland AS, Ward EM, Sadhu SK, Guo Y, Taylor ME, Drickamer K. Novel mouse homologs of human DC-SIGN: Widely divergent biochemical properties of the complete set of mouse DC-SIGN-related proteins. J Biol Chem. 2006;281:20440-20449.
- Rapoport EM, Mochalova LV, Gabius HJ, Romanova J, Bovin NV. Search for additional influenza virus to cell interactions. Glycoconj J. 2006;23:115-125.
- Sampathkumar SG, Jones MB, Meledeo MA, Campbell CT, Choi SS, Hida K, Gomutputra P, Sheh A, Gilmartin T, Head SR, Yarema KJ. Targeting glycosylation pathways and the cell cycle: sugar-dependent activity of butyrate-carbohydrate cancer prodrugs. Chemistry and Biology. 2006;13:1265-75.
- Sanchez JF, Lescar J, Chazalet V, Audfray A, Gagnon J, Alvarez R, Breton C, Imberty A, Mitchell EP. Biochemical and structural analysis of Helix pomatia agglutinin (HPA): A hexameric lectin with a novel fold. J Biol Chem. 2006;281:20171-20180.
- Singh T, Wu JH, Peumans WJ, Rouge P, Van Damme EJ, Alvarez RA, Blixt O, Wu AM. Carbohydrate specificity of an insecticidal lectin isolated from the leaves of Glechoma hederacea towards mammalian glycoconjugates. Biochem J. 2006;393:331-341. (Reproduced with permission, © the Biochemical Society. Visit Journal Homepage.)
- Stevens J, Blixt O, Glaser L, Taubenberger JK, Palese P, Paulson JC, Wilson IA. Glycan microarray analysis of the hemagglutinins from modern and pandemic influenza viruses reveals different receptor specificities. J Mol Biol. 2006;355:1143-1155. (Reprinted with permission from Elsevier. Visit Journal Homepage.)
- Stevens J, Blixt O, Tumpey TM, Taubenberger JK, Paulson JC, Wilson IA. Structure and receptor specificity of the hemagglutinin from an H5N1 influenza virus. Science. 2006;312:404-410.
- Stillman BN, Hsu DK, Pang M. Brewer CF, Johnson P, Liu F-T, Baum LG. Galectin-3 and Galectin-1 bind distinct cell surface glycoprotein receptors to induce T cell death. J Immunol. 2006;176:778-789.
- Taniguchi N, Nakamura K, Narimatsu H, von der Lieth C-W, Paulson J. Human Disease Glycomics/Proteome Initiative Workshop and the 4th HUPO Annual Congress. Proteomics. 2006;6:12-13.
- Van Liempt E, Bank CM, Mehta P, Garci A-Vallejo JJ, Kawar ZS, Geyer R, Alvarez RA, Cummings RD, van Kooyk Y, van Die I. Specificity of DC-SIGN for mannose- and fucose-containing glycans. FEBS Lett. 2006;580:6123-6131.
- Vasiliu D, Razi N, Zhang Y, Jacobsen N, Allin K, Liu X, Hoffmann J, Bohorov O, Blixt O. Large-scale chemoenzymatic synthesis of blood group and tumor-associated poly-N-acetyllactosamine antigens. Carbohydr Res. 2006;341:1447-1457.
- Wu D, Zajonc DM, Fujio M, Sullivan BA, Kinjo Y, Kronenberg M, Wilson IA, Wong CW. Design of natural killer T cell activators: Structure and function of a microbial glycosphingolipid bound to mouse CD1d. Proc Natl Acad Sci USA. 2006;103:3972-3977.
- Wu Z, Miller E, Agbandje-McKenna M, Samulski RJ. Alpha2,3 and alpha2,6 N-linked sialic acids facilitate efficient binding and transduction by adeno-associated virus types 1 and 6. J Virol. 2006;80:9093-103.
- Yan X-J, Albesiano E, Zanesi N, Yancopoulos S, Sawyer A, Romano E, Petlickovski A, Efremov DG, Croce CM, Chiorazzi N. B cell receptors in TCL1 transgenic mice resemble those of aggressive, treatment-resistant human chronic lymphocytic leukemia. Proc Natl Acad Sci USA. 2006; 103:11713-11718.
- Zajonc DM, Ainge GD, Painter GF, Severn WB, Wilson IA. Structural characterization of mycobacterial phosphatidylinositol mannoside binding to mouse CD1d. J Immunol. 2006;177:4577-83.
2005
- Blixt O, Vasiliu D, Allin K, Jacobsen N, Warnock D, Razi N, Paulson JC, Bernatchez S, Gilbert M, Wakarchuk W. Chemoenzymatic synthesis of 2-azidoethyl-ganglio-oligosaccharides GD3, GT3, GM2, GD2, GT2, GM1 and GD1a. Carbohydr Res. 2005;340:1963-1972.
- Bochner SB, Alvarez RA, Mehta P, Bovin NV, Blixt O, White JR, Schnaar R. Glycan array screening reveals a candidate ligand for siglec-8. J Biol Chem. 2005;280:4307-4312.
- Chen S, Kawashima H, Lowe JB, Lanier LL, Fukuda M. Suppression of tumor formation in lymph nodes by L-selectin-mediated natural killer cell recruitment. J Exp Med. 2005;202:1679-1689.
- Coombs PJ, Graham SA, Drickamer K, Taylor ME. Selective binding of the scavenger receptor C-type lectin to Lewisx trisaccharide and related glycan ligands. J Biol Chem. 2005;280:22993-22999.
- Giabbai B, Sidobre S, Crispin MD, Sanchez-Ruiz Y, Bachi A, Kronenberg M, Wilson IA, Degano M. Crystal structure of mouse CD1d bound to the self ligand phosphatidylcholine: a molecular basis for NKT cell activation. J Immunol. 2005;15:977-984.
- Goldberg D, Sutton-Smith M, Paulson J, Dell A. Automatic annotation of matrix-assisted laser desorption/ionization N-glycan spectra. Proteomics. 2005;5:865-875.
- Henion TR, Raitcheva D, Grosholz R, Biellmann F, Skarnes WC, Hennet T, Schwarting GA. b1,3-N-Acetylglucosaminyltransferase 1 glycosylation is required for axon pathfinding by olfactory sensory neurons. J Neurosci. 2005;25:1894-1903.
- Kawano S, Hashimoto K, Miyama T, Goto S, Kanehisa M. Prediction of glycan structures from gene expression data based on glycosyltransferase reactions. Bioinformatics 2005;21:3976-3982.
- Kawashima H, Petryniak B, Hiraoka N, Mitoma J, Huckaby V, Nakayama J, Uchimura K, Kadomatsu K, Muramatsu T, Lowe JB, Fukuda M. N-acetylglucosamine-6-O-sulfotransferases 1 and 2 cooperatively control lymphocyte homing through L-selectin ligand biosynthesis in high endothelial venules. Nat Immunol. 2005;6:1096-1104.
- Kinjo Y, Wu D, Kim G, Xing G-W, Poles MA, Ho DD, Tsuji M, Kawahara K, Wong C-H, Kronenberg M. Recognition of bacterial glycosphingolipids by natural killer T cells. Nature. 2005;434:520-525.
- Leppanen A, Stowell S, Blixt O, Cummings RD. Dimeric Galectin-1 binds with high affinity to a2,3-sialylated and non-sialylated terminal N-acetyllactosamine units on surface-bound extended glycans. J Biol Chem. 2005;280:5549-5562.
- Ohtsubo K, Takamatsu S, Minowa MT, Yoshida A, Takeuchi M, Marth JD. Dietary and genetic control of glucose transporter 2 glycosylation promotes insulin secretion in suppressing diabetes. Cell. 2005;123:1307-1321.
- Piccio L, Rossi B, Colantonio L, Grenningloh R, Gho A, Ottoboni L, Homeister JW, Scarpini E, Martinello M, Laudanna C, D’Ambrosio D, Lowe JB, Constantin G. Efficient recruitment of lymphocytes in inflamed brain venules requires expression of cutaneous lymphocyte antigen and fucosyltransferase-VII. J Immunol. 2005;174:5805-5813.
- Schwartz-Albiez R, Kniep B. Perspectives for establishment and reorganization of carbohydrate-directed CD antibodies. Report of the carbohydrate section. Cell Immunol. 2005;236:48-50. (Reprinted with permission from Elsevier. Visit Journal Homepage.)
- Siegmund K, Feuerer M, Siewert C, Ghani S, Haubold U, Dankof A, Krenn V, Schon MP, Scheffold A, Lowe JB, Hamann A, Syrbe U, Huehn J. Migration matters: regulatory T cell compartmentalization determines suppressive activity in vivo. Blood. 2005;106:3097-3104.
- Smith FI, Qu Q, Hong SJ, Kim KS, Gilmartin TJ, Head SR. Gene expression profiling of mouse postnatal cerebellar development using oligonucleotide microarrays designed to detect differences in glycoconjugate expression. Gene Expr Patterns. 2005;5:740-749.
- Tateno H, Crocker PR, Paulson JC. Mouse Siglec-F and human Siglec-8 are functionally convergent paralogs that are selectively expressed on eosinophils and recognize 6’-sulfo-sialyl Lewis X as a preferred glycan ligand. Glycobiology. 2005;15:1125-1135.
- van Vliet SJ, van Liempt E, Saeland E, Aarnoudse CA, Appelmelk B, Irimura T, Geijtenbeek TBH, Blixt O, Alvarez R, van Die I, van Kooyk Y. Carbohydrate profiling reveals a distinctive role for the C-type lectin MGL in the recognition of helminth parasites and tumor antigens by dendritic cells. Int Immunol. 2005;17:661-669.
- Westerlind U, Hagback P, Tidback B, Wiik L, Blixt O, Razi N, Norberg T. Synthesis of deoxy and acylamino derivatives of lactose and use of these for probing the active site of Neisseria meningitidis N-acetylglucosaminyltransferase. Carbohydr Res. 2005;340:221-233. (Reprinted with permission from Elsevier. Visit Carbohydrate Research Journal Homepage.)
- Wu D, Xing G-W, Poles MA, Horowitz A, Kinjo Y, Sullivan B, Bodmer-Narkevitch V, Plettenburg O, Kronenberg M, Tsuji M, Ho DD and Wong C-H. Bacterial glycolipids and analogs as antigens for CD1d-restricted NKT cells. Proc Natl Acad Sci USA. 2005;102:1351-1356. (Visit Journal Homepage.)
- Xia B, Kawar ZS, Ju T, Alvarez RA, Sachdev GP, Cummings RD. Versatile fluorescent derivatization of glycans for glycomic analysis. Nat Methods. 2005;2:845-850.
- Zajonc DM, Cantu C, Mattner J, Zhou D, Savage PB, Bendelac A, Wilson IA, Teyton L. Structure and function of a potent agonist for the semi-invariant natural killer T cell receptor. Nat Immunol. 2005;6:810-818.
- Zajonc DM, Crispin MDM, Bowden TA, Young DC, Cheng T-Y, Hu J, Costello CE, Rudd PM, Dwek RA, Miller MJ, Brenner MB, Moody DB, Wilson IA. Molecular mechanism of lipopeptide presentation by CD1a. Immunity. 2005;22:209-219.
- Zajonc DM, Maricic I, Wu D, Halder R, Roy K, Wong CH, Kumar V, Wilson IA. Structural basis for CD1d presentation of a sulfatide derived from myelin and its implications for autoimmunity. J Exp Med. 2005;202:1517-1526.
2004
- Homeister JW, Daugherty A, Lowe JB. a(1,3)Fucosyltransferases FucT-IV and FucT-VII control susceptibility to atherosclerosis in apolipoprotein E -/- mice. Arterioscler Thromb Vasc Biol. 2004;24:1897-1903.
- Blixt A, Head S, Mondala T, Scanlan C, Huflejt ME, Alvarez R, Bryan MC, Fazio F, Calarese D, Stevens J, Razi N, Stevens DJ, Skehel JJ, van Die I, Burton DR, Wilson IA, Cummings R, Bovin N, Wong C-W, Paulson JC. Printed covalent glycan array for ligand profiling of diverse glycan binding proteins. Proc Natl Acad Sci USA. 2004;101:17033-17038. (Visit Journal Homepage.)
- Sidobre S, Hammond KJL, Benazet-Sidobre L, Maltsev SD, Richardson SK, Ndonye RM, Howell AR, Sakai T, Besra GS, Porcelli SA, Kronenberg M. The T cell antigen receptor expressed by Va14i NKT cells has a unique mode of glycosphingolipid antigen recognition. Proc Natl Acad Sci USA. 2004;101:12254-12259. (Visit Journal Homepage.)
- Blixt O, Razi N. Strategies for synthesis of an oligosaccharide library using a chemoenzymatic approach. In: Wang P and Ichikawa Y, eds. ACS Symposium Series 873. 2004:93-112.
- Guo Y, Feinberg H, Conroy E, Mitchell DA, Alvarez R, Blixt O, Taylor ME, Weis WI, Drickamer K. Structural basis for distinct ligand-binding and targeting properties of the receptors DC-SIGN and DC-SIGNR. Nat Struct Mol Biol. 2004;11:591-598.
- Moody DB, Young DC, Cheng T-Y, Rosat J-P, Roura-mir C, O’Connor PB, Zajonc DM, Walz A, Miller MJ, Levery SB, Wilson IA, Costello CE and Brenner MB. T Cell Activation by Lipopeptide Antigens. Science. 2004;303:527-531. You may link to the entire article from the home page.
- Wu X, Steet RA, Bohorov O, Bakker J, Newell J, Krieger M, Spaapen L, Kornfeld S, Freeze HH. Mutation of the COG complex subunit gene COG7 causes a lethal congenital disorder. Nat Med. 2004;10:518-523.
2003
- Smith PL, Myers JT, Rogers CE, Zhou L, Petryniak B, Becher DJ, Homeister JW, Lowe JB. Conditional control of selectin ligand expression and global fucosylation events in mice with a targeted mutation at the FX locus. J Cell Biol. 2002;158:801-815. (Reproduced by copyright permission of The Rockefeller University Press.)
- Brown JR, Fuster MM, Whisenant T, Esko JD. Expression Patterns of a2,3-Sialyltransferases and a1,3-Fucosyltransferases Determine the Mode of Sialyl Lewis X Inhibition by Disaccharide Decoys. The Journal of Biological Chemistry. 2003;278:23352-23359.
- Danzer C-P, Collins BE, Blixt O, Paulson JC, Nitschke L. Transitional and marginal zone B cells have a high proportion of unmasked CD22: implications for BCR signaling. International Immunology. 2003;15:1137-1147.
- Lee LV, Mitchell ML, Huang S-J, Fokin VV, Sharpless B, Wong C-H. A potent and highly selective inhibitor of human a-1,3-fucosyltransferase via click chemistry. J Am Chem Soc. 2003;125:9588-9589.
- Zajonc DM, Elsliger MA, Teyton L, Wilson IA. Crystal structure of CD1a in complex with a sulfatide self antigen at a resolution of 2.15 Å. Nature Immunology. 2003;4:808-815.
2002
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| Review Articles (see posting policy below) |
- van Kooyk Y, Rabinovich GA. Protein-glycan interactions in the control of innate and adaptive immune responses. Nat Immunol. 2008 Jun;9(6):593-601.
- Packer NH, von der Lieth CW, Aoki-Kinoshita KF, Lebrilla CB, Paulson JC, Raman R, Rudd P, Sasisekharan R, Taniguchi N, York WS. Frontiers in glycomics: Bioinformatics and biomarkers in disease An NIH White Paper prepared from discussions by the focus groups at a workshop on the NIH campus, Bethesda MD (September 11-13, 2006). Proteomics. 2008 Jan;8(1):8-20.
2007 (in alphabetical order by first author)
- Crocker PR, Paulson JC, Varki A. Siglecs and their roles in the immune system. Nat Rev Immunol. 2007 Apr;7(4):255-66.
- Taniguchi N, Paulson JC. Frontiers in Glycomics; Bioinformatics and Biomarkers in Disease September 11-13, 2006 Natcher Conference Center, NIH Campus, Bethesda, MD, USA. Proteomics. 2007 May;7(9):1360-3.
- Toukach P, Joshi HJ, Ranzinger R, Knirel Y, von der Lieth CW. Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de. Nucleic Acids Res. 2007 Jan;35(Database issue):D280-6.
- Turnbull JE, Field RA. Emerging glycomics technologies. Nat Chem Biol. 2007 Feb;3(2):74-7.
- Wada Y, Azadi P, Costello CE, Dell A, Dwek RA, Geyer H, Geyer R, Kakehi K, Karlsson NG, Kato K, Kawasaki N, Khoo KH, Kim S, Kondo A, Lattova E, Mechref Y, Miyoshi E, Nakamura K, Narimatsu H, Novotny MV, Packer NH, Perreault H, Peter-Katalinic J, Pohlentz G, Reinhold VN, Rudd PM, Suzuki A, Taniguchi N. Comparison of the methods for profiling glycoprotein glycans--HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. Glycobiology. 2007 Apr;17(4):411-22
- Weiss AA, Iyer SS. Glycomics Aims To Interpret the Third Molecular Language of Cells. Microbe 2007;2(10):489-97.
- Zajonc DM, Wilson IA. Architecture of CD1 proteins. Curr Top Microbiol Immunol. 2007;314:27-50.
2006
- Alvarez RA, Blixt O. Identification of ligand specificities for glycan-binding proteins using glycan arrays. Methods Enzymol. 2006;415:292-310.
- Aoki-Kinoshita KF, Kanehisa M, Kao M-L, Li X-Y, Wang W. A 6-approximation algorithm for computing the least common AoN-supertree with application to the reconstruction of glycan trees. Lecture Notes in Computer Science. 2006;4288:100-110.
- Blixt O, Razi N. Chemoenzymatic synthesis of glycan libraries. Methods Enzymol. 2006;415:137-53.
- Freeze HH. Genetic defects in the human glycome. Nat Rev Genet. 2006;7:537-551. (Reproduced with permission from Nature Reviews Genetics © 2006 Macmillan Magazines Ltd.)
- Hashimoto K, Goto S, Kawano S, Aoki-Kinoshita KF, Ueda N, Hamajima M, Kawasaki T, Kanehisa M. KEGG as a glycome informatics resource. Glycobiology. 2006;16:63R-70R.
- Haslam SM, North SJ, Dell A. Mass spectrometric analysis of N- and O-glycosylation of tissues and cells. Curr Opin Struct Biol. 2006;16:584-591.
- Krueger KE, Srivastava S. Posttranslational protein modifications: current implications for cancer detection, prevention, and therapeutics. Mol Cell Proteomics. 2006;5:1799-1810.
- Larsen K, Thygesen MB, Guillaumie F, Willats WG, Jensen KJ. Solid-phase chemical tools for glycobiology. Carbohydr Res. 2006;341:1209-1234. (Reprinted with permission from Elsevier. Visit Journal Homepage.)
- Lehrman MA. Stimulation of N-linked glycosylation and lipid-linked oligosaccharide synthesis by stress responses in metazoan cells. Crit Rev Biochem Mol Biol. 2006;41:51-75.
- Lutteke T, Bohne-Lang A, Loss A, Goetz T, Frank M, von der Lieth C-W. GLYCOSCIENCES.de: An internet portal to support glycomics and glycobiology research. Glycobiology. 2006;16:71R-81R.
- Ohtsubo K, Marth JD. Glycosylation in cellular mechanisms of health and disease. Cell. 2006;126:855-867.
- Paulson JC, Blixt O, Collins BE. Sweet spots in functional glycomics. Nat Chem Biol. 2006;2:238-248.
- Raman R, Venkataraman M, Ramakrishnan S, Lang W, Raguram S, Sasisekharan R. Advancing glycomics: Implementation strategies at the Consortium for Functional Glycomics. Glycobiology. 2006;16:82R-90R.
- Stevens J, Blixt O, Paulson JC, Wilson IA. Glycan microarray technologies: tools to survey host specificity of influenza viruses. Nat Rev Microbiol. 2006;4:857-864.
- Taniguchi N. From glycobiology to systems glycobiology: International network with Japanese scientists through consortia. IUBMB Life. 2006;58:269-272.
- van Die I, Cummings RD. Glycans modulate immune responses in helminth infections and allergy. Chem Immunol Allergy. 2006;90:91-112. (Reprinted with permission from S. Karger AG, Basel.)
- Varki A, Angata T. Siglecs – the major sub-family of I-type lectins. Glycobiology. 2006;16:1R-27R.
- von der Lieth C-W, Lutteke T, Frank M. The role of informatics in glycobiology research with special emphasis on automatic interprestation of MS spectra. Biochim Biophys Acta. 2006;1760:568-577. (Reprinted with permission from Elsevier. Visit Journal Homepage.)
- von Gunten S, Simon HU. Sialic acid binding immunoglobulin-like lectins may regulate innate immune responses by modulating the life span of granulocytes. FASEB J. 2006;20:601-605.
- Zhou D. The immunological function of iGb3. Curr Protein Pept Sci. 2006;7:325-333.
2005
- Crocker PR. Siglecs in innate immunity. Curr Opin Pharmacol. 2005;5:431-437. (Reprinted with permission from Elsevier. Visit Journal Homepage.)
- Fuster MM, Esko JD. The sweet and sour of cancer: glycans as novel therapeutic targets. Nat Rev Cancer. 2005;5:526-542. (Reproduced with permission from Nature Reviews Cancer © 2005 Macmillan Magazines Ltd.)
- Hava DL, Brigl M, van den Elzen P, Zajonc DM, Wilson IA, Brenner MB. CD1 assembly and the formation of CD1-antigen complexes. Curr Opin Immunol. 2005;17:88-94. (Reprinted with permission from Elsevier. Visit Journal Homepage.)
- Liu FT, Rabinovich GA. Galectins as modulators of tumor progression. Nat Rev Cancer. 2005;5:29-41.
- Lucas AH, Apicella MA, Taylor CE. Carbohydrate moieties as vaccine candidates. Clin Infect Dis. 2005;41:705-712.
- Moody DB, Zajonc DM, Wilson IA. Anatomy of CD1-lipid antigen complexes. Nat Rev Immunol. 2005;5:389-399.
- Perez S, Mulloy B. Prospects for glycoinformatics. Curr Opin Struct Biol. 2005;15:517-524.
- Raman R, Raguram S, Venkataraman G, Paulson JC, Sasisekharan R. Glycomics: an integrated systems approach to structure-function relationships of glycans. Nat Methods. 2005;2:817-824.
- Stillman BN, Mischel PS, Baum LG. New roles for galectins in brain tumors – from prognostic markers to therapeutic targets. Brain Pathol. 2005;15:124-132.
- Van Rhijn I, Zajonc DM, Wilson IA, Moody DB. T-cell activation by lipopeptide antigens. Curr Opin Immunol. 2005;17:222-229. (Reprinted with permission from Elsevier. Visit Journal Homepage.)
2004
- Collins BE, Paulson JC. Cell surface biology mediated by low affinity multivalent protein-glycan interactions. Curr Opin Chem Biol. 2004;8:1-9. (Reprinted with permission from Elsevier. Visit Journal Homepage.)
- Haltiwanger RS, Lowe JB. Role of glycosylation in development. Annu Rev Biochem. 2004;73:491-537. (Reprinted with permission from Annual Reviews.)
- Geijtenbeek TB, van Vliet SJ, Engering A, ‘t Hart BA, van Kooyk Y. Self- and nonself-recognition by C-type lectins on dendritic cells. Annu Rev Immunol. 2004;22:33-54. (With permission, from the Annual Review of Immunology, Volume 22 © 2004 by Annual Reviews www.annualreviews.org.)
- Shriver Z, Raguram S, Sasisekharan R. Glycomics: A pathway to a class of new and improved therapeutics. Nature Reviews Drug Discovery. 2004;3:863-873.
- von der Lieth CW, Bohne-Lang A, Lohmann KK, Frank M. Bioinformatics for glycomics: status, methods, requirements and perspectives. Briefings in Bioinformatics. 2004;5:164-178. (Visit Journal Homepage.)
- von der Lieth CW. An endorsement to create open access databases for analytical data of complex carbohydrates. Journal of Carbohydrate Chemistry. 2004;23:277-297.
2003
2002
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| Books (see posting policy below) |
- Smith DF, Cummings RD. Deciphering Lectin Ligands through Glycan Arrays. In Animal Lectins: A Functional View. CRC Press, New York; 2008.
- Van Damme EJM, Smith DF, Cummings RD, Peumans WJ. Glycan arrays to decipher the specificity of plant lectins. In The Molecular Immunology of Complex Carbohydrates. Academic/Plenum Publishers, New York; 2008.
- Stowell SR and Cummings RD. Interactions of Galectins with Leukocytes. In Animal Lectins: A Functional View. CRC Press, New York; 2008.
- Blixt O and Razi, N. Enzymatic Synthesis with Transferases Glycoscience. In Glycoscience, Chemistry and Chemical Biology. Springer-Verlag, Berlin Heidelberg New York; 2008 April pp. 1361-1385.
- Taylor ME, Drickamer K. Introduction to glycobiology. 2nd ed. Oxford and New York: Oxford University; 2006.
- Sharon N, Lis H. Lectins. 2nd ed. Kluwer Academic Publishers; 2004.
- Taylor ME, Drickamer K. Introduction to glycobiology. Oxford and New York: Oxford University Press; 2003.
- Biochemical Society of Great Britain. 69th Symposium, University of York; 2001. Glycogenomics: the impact of genomics and informatics on glycobiology. London: Portland Press; 2002.
- Fukuda M, Hindsgaul O. Molecular and cellular glycobiology. Oxford and New York: Oxford University Press; 2000.
- Varki A, Cummings R, Esko J, Freeze H, Hart G, Marth J. Essentials of Glycobiology. Plainview, New York: Cold Spring Harbor Press; 1999.
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In The News (see posting policy below) |
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2007
2006
- Dublin M. FUNCTIONAL GLYCOMICS: With NIGMS 'Glue' Grant, Glycomics Team Soldiers On. Genome Technology. November 2006; 6:11-12.
- New multi-year funding will allow international group to unravel carbohydrate mysteries. Medical News Today. September 12, 2006.
- Bedford C, Cas T, Francois I, Harding S. Glycomics: From glycobiology to diagnostics and therapeutics. Drug News Perspect. April, 2006.
- Amoils S. Solving another piece of the H5N1 puzzle. Nat Rev Microbiol. 2006;4:321. Reproduced with permission from Nature Reviews Microbiology, copyright 2006, Macmillan Magazines Ltd.
- Breindl A. H5N1 made to switch species, but others have done it easier. BioWorld Today. March 23, 2006.
- Breindl A. New method tests if H5N1 can learn how to spread. BioWorld Today. March 24, 2006.
- Dove A. Counting carbs: Glycomics gears up. Genomics and Proteomics Magazine. March, 2006.
- Machalek AZ. Viral Voyages. Findings, NIH/NIGMS. March, 2006.
- Singer S. Technology maps mutation of bird flu. Oxfordpress.com. March 17, 2006.
- Minor mutations in avian flu virus increase chances of human infection; few adaptations are needed to transform it into potential pandemic virus. Ascribe, The Public Interest Newswire. March 16, 2006.
- Scientists spot potential bird-flu pathway to humans. Forbes.com. March 16, 2006.
- Knox R. Scientists find how bird-flu virus ‘humanizes’. All Things Considered, National Public Radio. March 16, 2006.
- Amoils S. Analysing influenza’s sweet spot. Nat Rev Microbiol. 2006;4:164-165. Reproduced with permission from Nature Reviews Microbiology, copyright 2006, Macmillan Magazines Ltd.
- Cassiday LT. A versatile glycomics tool. Anal Chem. 2006;78;644.
- New technology could head off bird flu. InformationWeek.com. February 3, 2006.
- New technology effectively gauges specificity of influenza strains, including 1918 spanish flu; Scripps scientists solve structure of a critical innate immune system protein. Ascribe, The Public Interest Newswire. January 10, 2006.
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