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Glycans obtained for the Pathogen Array

Many Glycan-Binding Proteins (GBPs) are believed to play a role in innate immunity through recognition of pathogen glycans, but very little information is known about their specificity towards pathogen glycans. To address this gap in knowledge, the CFG is developing a unique pathogen glycan array to assess the specificity of these GBPs. The list below shows the current CFG collection of representative pathogen bacterial polysaccharides (BPS), for the array. These BPSs have been well defined in terms of serotyping and structural characterization. The first CFG prototype array will contain 30 BPS aimed to provide a highly accurate and sensitive assay for GBP specificity. The table below is sorted by 'Bacteria' name.

Polysaccharides: Bacteria / Strain/ Serogroup / Serotype Providing Source
Escherichia coli O29 Y. Knirel
Escherichia coli O40 Y. Knirel
Escherichia coli O49 Y. Knirel
Escherichia coli O52 Y. Knirel
Escherichia coli O55:B5 Sigma
Escherichia coli 058 Y. Knirel
Escherichia coli 061 Y. Knirel
Escherichia coli O71 Y. Knirel
Escherichia coli 073 Y. Knirel
Escherichia coli O85 Y. Knirel
Escherichia coli O99 Y. Knirel
Escherichia coli O106 Y. Knirel
Escherichia coli O107 Y. Knirel
Escherichia coli 0112:ab Y. Knirel
Escherichia coli 0118 Y. Knirel
Escherichia coli 0125 Y. Knirel
Escherichia coli 0127:B8 Sigma
Escherichia coli O128-B12 Sigma
Escherichia coli O130 Y. Knirel
Escherichia coli O145 Y. Knirel
Escherichia coli O148 Y. Knirel
Escherichia coli O150 Y. Knirel
Escherichia coli O151 Y. Knirel
Escherichia coli O157 J. Richards, NRC
Escherichia coli 0168 Y. Knirel
Escherichia coli O180 Y. Knirel
Escherichia coli K235 Sigma
Francisella novicida OPS Y. Knirel
Francisella tularensis OPS Y. Knirel
Neisseria meningitidis lpt3 core J. Richards, NRC
Klebsiella O1 OPS Y. Knirel
Klebsiella O2a OPS Y. Knirel
Klebsiella O2ac OPS Y. Knirel
Klebsiella O3 OPS Y. Knirel
Klebsiella O4 OPS Y. Knirel
Klebsiella O5 OPS Y. Knirel
Klebsiella O8 OPS Y. Knirel
Klebsiella O12 OPS Y. Knirel
Porphyromonas gingivalis LPS InvivoGen
Proteus O56 (genomospecies 4) Y. Knirel
Proteus mirabilis O3a, 3c (G1) Y. Knirel
Proteus mirabilis O3ab (S1959) Y. Knirel
Proteus mirabilis O5 (PrK 12/57) Y. Knirel
Proteus mirabilis O6 (PrK 14/57) Y. Knirel
Proteus mirabilis O8 (TG326) Y. Knirel
Proteus mirabilis O9 (PrK 18/57) Y. Knirel
Proteus mirabilis O10 (HJ4320) Y. Knirel
Proteus mirabilis O11 (9B-m) Y. Knirel
Proteus mirabilis O11 (PrK 24/57) Y. Knirel
Proteus mirabilis O13 (PrK 26/57) Y. Knirel
Proteus mirabilis O14a,14b (PrK 29/57) Y. Knirel
Proteus mirabilis O16 (4652) Y. Knirel
Proteus mirabilis O17 (PrK 32/57) Y. Knirel
Proteus mirabilis O18 (PrK 32/57) Y. Knirel
Proteus mirabilis O20 (PrK 32/57) Y. Knirel
Proteus mirabilis O23a, 23b, 23c (CCUG 10701) Y. Knirel
Proteus mirabilis O23a, 23b, 23d (PrK 42/57) Y. Knirel
Proteus mirabilis O24 (PrK 47/57)* Y. Knirel
Proteus mirabilis O26 (PrK 49/57) Y. Knirel
Proteus mirabilis O27 (PrK 50/57) Y. Knirel
Proteus mirabilis O28 (PrK 51/57) Y. Knirel
Proteus mirabilis O29a (PrK 52/57) Y. Knirel
Proteus mirabilis O29a, 29b (2002) Y. Knirel
Proteus mirabilis O33 (D52) Y. Knirel
Proteus mirabilis O40 (10703) Y. Knirel
Proteus mirabilis O41 (PrK 67/57) Y. Knirel
Proteus mirabilis O43 (PrK 69/57) Y. Knirel
Proteus mirabilis O49 (PrK 75/57) Y. Knirel
Proteus mirabilis O50 (TG332) Y. Knirel
Proteus mirabilis O51 (19011)* Y. Knirel
Proteus mirabilis O54a, 54b (10704) Y. Knirel
Proteus mirabilis O54ab (OE) Y. Knirel
Proteus mirabilis O57 (TG319) Y. Knirel
Proteus mirabilis O74 (10705, OF) Y. Knirel
Proteus mirabilis O75 (10702, OC) Y. Knirel
Proteus mirabilis O77 (3 B-m) Y. Knirel
Proteus myxofaciens O60 Y. Knirel
Proteus penneri O8 (106) Y. Knirel
Proteus penneri O17 (16) Y. Knirel
Proteus penneri O31a (26) Y. Knirel
Proteus penneri O31ab (28) Y. Knirel
Proteus penneri O52 (15) Y. Knirel
Proteus penneri O58 (12) Y. Knirel
Proteus penneri O59 (9) Y. Knirel
Proteus penneri O61 (21) Y. Knirel
Proteus penneri O62 (41) Y. Knirel
Proteus penneri O63 (22) Y. Knirel
Proteus penneri O64a, 064b, 064c (27) Y. Knirel
Proteus penneri O64a, 064b, 064d (39) Y. Knirel
Proteus penneri O65 (34) Y. Knirel
Proteus penneri O66 (2) Y. Knirel
Proteus penneri O67 (8) Y. Knirel
Proteus penneri O68 (63) Y. Knirel
Proteus penneri O69 (25) Y. Knirel
Proteus penneri O70 (60) Y. Knirel
Proteus penneri O71 (42) Y. Knirel
Proteus penneri O72a, 072b (4) Y. Knirel
Proteus penneri O73a, O73b (103) Y. Knirel
Proteus penneri O73ac (75) Y. Knirel
Proteus vulgaris O1 (18984)* Y. Knirel
Proteus vulgaris O2 (OX2) Y. Knirel
Proteus vulgaris O4 (PrK 9/57) Y. Knirel
Proteus vulgaris O12 (PrK 25/57) Y. Knirel
Proteus vulgaris O13 (8344) Y. Knirel
Proteus vulgaris O15 (PrK 30/57) Y. Knirel
Proteus vulgaris O17 (PrK 33/57) Y. Knirel
Proteus vulgaris O19a (PrK 37/57) Y. Knirel
Proteus vulgaris O21 (PrK 39/57)* Y. Knirel
Proteus vulgaris O22 (PrK 40/57) Y. Knirel
Proteus vulgaris O23a, O23b, O23c (10701) Y. Knirel
Proteus vulgaris O24 (PrK 47/57) Y. Knirel
Proteus vulgaris O25 (PrK 48/57) Y. Knirel
Proteus vulgaris O34 (4669)* Y. Knirel
Proteus vulgaris O37a, O37b (PrK 63/57) Y. Knirel
Proteus vulgaris O37a, O37c (PrK 72/57) Y. Knirel
Proteus vulgaris O44 (PrK 67/57) Y. Knirel
Proteus vulgaris O45 (4680) Y. Knirel
Proteus vulgaris O47 (PrK 73/57) Y. Knirel
Proteus vulgaris O53 (TG 276-10) Y. Knirel
Proteus vulgaris O54a, O54c (TG 103) Y. Knirel
Proteus vulgaris O55 (TG 155) Y. Knirel
Proteus vulgaris O65 (TG 251) Y. Knirel
Proteus vulgaris O76 (HSC438) Y. Knirel
Providencia alcalifaciens O5 Y. Knirel
Providencia alcalifaciens O6* Y. Knirel
Providencia alcalifaciens O19 Y. Knirel
Providencia alcalifaciens O21 Y. Knirel
Providencia alcalifaciens O23 Y. Knirel
Providencia alcalifaciens O27 Y. Knirel
Providencia alcalifaciens O29 Y. Knirel
Providencia alcalifaciens O30 Y. Knirel
Providencia alcalifaciens O32 Y. Knirel
Providencia alcalifaciens O36* Y. Knirel
Providencia alcalifaciens O39 Y. Knirel
Providencia rustigianii O14 Y. Knirel
Providencia rustigianii O16 Y. Knirel
Providencia rustigianii O34 Y. Knirel
Providencia stuartii O4 Y. Knirel
Providencia stuartii O18 Y. Knirel
Providencia stuartii O20* Y. Knirel
Providencia stuartii O43 Y. Knirel
Providencia stuartii O44 Y. Knirel
Providencia stuartii O47 Y. Knirel
Providencia stuartii O49 Y. Knirel
Providencia stuartii O52 Y. Knirel
Providencia stuartii O57 Y. Knirel
Pseudomonas aerguinosa O1 (Fisher immunotype 4) Y. Knirel
Pseudomonas aerguinosa O2 (2a),2d,2f Y. Knirel
Pseudomonas aerguinosa O2 2a,2b Y. Knirel
Pseudomonas aerguinosa O2 2a,2b,2e Y. Knirel
Pseudomonas aerguinosa O2 2a,2d Y. Knirel
Pseudomonas aerguinosa O2 (Fisher immunotype 3) Y. Knirel
Pseudomonas aerguinosa O2 Immuno 7 Y. Knirel
Pseudomonas aerguinosa O3 3a,3b Y. Knirel
Pseudomonas aerguinosa O3 3a,3b,3c Y. Knirel
Pseudomonas aerguinosa O3 3a,3d Y. Knirel
Pseudomonas aerguinosa O4 (Habs serotype 4) Y. Knirel
Pseudomonas aerguinosa O4 4a,4c Y. Knirel
Pseudomonas aerguinosa O6 6a,... Y. Knirel
Pseudomonas aerguinosa O6 6a,6c Y. Knirel
Pseudomonas aerguinosa O6 Immuno 1 Y. Knirel
Pseudomonas aerguinosa O6a (Habs serotype6, fraction IIa) Y. Knirel
Pseudomonas aerguinosa O6a (Habs serotype6, fraction IIb) Y. Knirel
Pseudomonas aerguinosa O7 7a,7b,7c Y. Knirel
Pseudomonas aerguinosa O7 7a,7b,7d Y. Knirel
Pseudomonas aerguinosa O7 7a,7d Y. Knirel
Pseudomonas aerguinosa O9 (Sandvik serotype II) Y. Knirel
Pseudomonas aerguinosa O10 Sigma
Pseudomonas aerguinosa O10 10a,10b Y. Knirel
Pseudomonas aerguinosa O10 10a,10c Y. Knirel
Pseudomonas aerguinosa O11 11a,11b Y. Knirel
Pseudomonas aerguinosa O12 12 Y. Knirel
Pseudomonas aerguinosa O13 (Sandvik serotype II) Y. Knirel
Pseudomonas aerguinosa O13 13a,13c Y. Knirel
Pseudomonas aerguinosa O14 14 Y. Knirel
Pseudomonas aerguinosa O15 15 Y. Knirel
Salmonella enterica abortus equi Sigma
Salmonella enterica O17 Y. Knirel
Salmonella enterica O28 Y. Knirel
Salmonella enterica O47 Y. Knirel
Salmonella enterica O55 Y. Knirel
Salmonella enteritidis dodeca saccharide T. Norberg
Salmonella enteritidis LPS Sigma
Salmonella typhimurium dodeca saccharide T. Norberg
Salmonella typhimurium LPS Sigma
Salmonella typhimurium SL 684 (Rc mut) Sigma
Salmonella typhimurium SL 11881 (Re mut) Sigma
Salmonella typhimurium TV 1191 (Ra mut) Sigma
Salmonella typhosa LPS Sigma
Serriata marcescens LPS Sigma
Shigella bodyii type 1 Y. Knirel
Shigella bodyii type 2 Y. Knirel
Shigella bodyii type 3 Y. Knirel
Shigella bodyii type 4 Y. Knirel
Shigella bodyii type 5 Y. Knirel
Shigella bodyii type 6 Y. Knirel
Shigella bodyii type 7 Y. Knirel
Shigella bodyii type 8 Y. Knirel
Shigella bodyii type 9 Y. Knirel
Shigella bodyii type 10 Y. Knirel
Shigella bodyii type 11 Y. Knirel
Shigella bodyii type 12 Y. Knirel
Shigella bodyii type 13 Y. Knirel
Shigella bodyii type 14 Y. Knirel
Shigella bodyii type 15 Y. Knirel
Shigella bodyii type 16 Y. Knirel
Shigella bodyii type 17 Y. Knirel
Shigella bodyii type 18 Y. Knirel
Shigella dysennteriae type 1 Y. Knirel
Shigella dysennteriae type 2 Y. Knirel
Shigella dysennteriae type 3 Y. Knirel
Shigella dysennteriae type 4 Y. Knirel
Shigella dysennteriae type 5 Y. Knirel
Shigella dysennteriae type 6 SR-strain Y. Knirel
Shigella dysennteriae type 7 Y. Knirel
Shigella dysennteriae type 8 (Russian) Y. Knirel
Shigella dysennteriae type 9 Y. Knirel
Shigella dysennteriae type 10 Y. Knirel
Shigella dysennteriae type 11 Y. Knirel
Shigella dysennteriae type 13 Y. Knirel
Shigella flexneri type 1a Y. Knirel
Shigella flexneri type 1b Y. Knirel
Shigella flexneri type 2a Y. Knirel
Shigella flexneri type 2b Y. Knirel
Shigella flexneri type 3a Y. Knirel
Shigella flexneri type 3b Y. Knirel
Shigella flexneri type 4a Y. Knirel
Shigella flexneri type 4b Y. Knirel
Shigella flexneri type 5b Y. Knirel
Shigella flexneri type 6 Y. Knirel
Shigella flexneri type 6a Y. Knirel
Shigella flexneri type X Y. Knirel
Yersinia pestis, 0KM218-37 Y. Knirel
Yersinia pestis, 11M-25 Y. Knirel
Yersinia pestis, 11M-37 Y. Knirel
Yersinia pestis, 260(11)-6C Y. Knirel
Yersinia pestis, 260(11)-37C-186 Y. Knirel
Yersinia pestis, 260(11)-37C-187 Y. Knirel
Yersinia pestis, 260(11)-37C-416 Y. Knirel
Yersinia pestis, 260(11)-37C-417 Y. Knirel
Yersinia pestis, 1146-25 Y. Knirel
Yersinia pestis, 1146-37 Y. Knirel
Yersinia pestis, I-2377-25C Y. Knirel
Yersinia pestis, I-2377-37C Y. Knirel
Yersinia pestis, KIMD1-25 Y. Knirel
Yersinia pestis, KIMD1-37 Y. Knirel
Yersinia pestis, KM218-6C Y. Knirel
Yersinia pestis, KM218-25 Y. Knirel
Yersinia pestis, KM218-37 Y. Knirel
Yersinia pestis, KM260(11)-25 Y. Knirel
Yersinia pestis, KM260(11)-37 Y. Knirel
Yersinia pestis, KM260(11)-Δ0186 Y. Knirel
Yersinia pestis, KM260(11)-Δ0187 Y. Knirel
Yersinia pestis, KM260(11)-ΔpmrF Y. Knirel
Yersinia pestis, KM260(11)-Δrfe Y. Knirel
Yersinia pestis, KM260(11)-Δrfe Y. Knirel
Yersinia pestis, KM260(11)-ΔwaaL Y. Knirel
Yersinia pestis, KM260(11)-ΔwaaQ Y. Knirel
Yersinia pestis, KM260(11)-wabC/waaL Y. Knirel
Yersinia pestis, KM260(11)-wabD/waaL Y. Knirel
Yersinia pestis, KM260(11)-yjhW-6C Y. Knirel
Yersinia pestis, P-1680-25C Y. Knirel
Yersinia pestis, P-1680-37C Y. Knirel
Yersinia pseudotuberculosis 85pCad-20C Y. Knirel
Yersinia pseudotuberculosis 85pCad-37C Y. Knirel
Yersinia pseudotuberculosis O:2a Y. Knirel
Yersinia pseudotuberculosis O:2a-dhmA Y. Knirel
Yersinia pseudotuberculosis O:2c Y. Knirel
Yersinia pseudotuberculosis O:3 Y. Knirel
Yersinia pseudotuberculosis O:4b Y. Knirel


Capsular Polysaccharides Providing Source
Escherichia coli K5 W. Vann
Escherichia coli K13 W. Vann
Escherichia coli K92 W. Vann
Neisseria meningitidis Group C W. Vann
Pneumococcal polysaccharide powder Type 1 ATCC
Pneumococcal polysaccharide powder Type 2 ATCC
Pneumococcal polysaccharide powder Type 3 ATCC
Pneumococcal polysaccharide powder Type 4 ATCC
Pneumococcal polysaccharide powder Type 5 ATCC
Pneumococcal polysaccharide powder Type 8 ATCC
Pneumococcal polysaccharide powder Type 9 ATCC
Pneumococcal polysaccharide powder Type 12 ATCC
Pneumococcal polysaccharide powder Type 14 ATCC
Pneumococcal polysaccharide powder Type 17 ATCC
Pneumococcal polysaccharide powder Type 19 ATCC
Pneumococcal polysaccharide powder Type 20 ATCC
Pneumococcal polysaccharide powder Type 22 ATCC
Pneumococcal polysaccharide powder Type 23 ATCC
Pneumococcal polysaccharide powder Type 26 ATCC
Pneumococcal polysaccharide powder Type 34 ATCC
Pneumococcal polysaccharide powder Type 43 ATCC
Pneumococcal polysaccharide powder Type 51 ATCC

PI Inputs/Suggestions

Compounds for the next version of the Pathogen Glycan Array

Compounds for the next version of the Mammalian Glycan Array

Antibodies to be screened on the Mammalian Glycan Array

Compounds scheduled for synthesis

More Information

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Last Updated Saturday, 23-Aug-2008 01:50:58 EDT. Please contact us with comments/questions.